Eucalyptus multi-omics database  (EucaMOD)

example: Eucur.00001; TROL

Welcome to EucaMOD

      Eucalyptus multi-omics database (EucaMOD) integrates a wide range of omics data, including genomics, comparative genomics, pan-proteomics, transcriptomics, epigenetics, and variomics. It also features 13 powerful analysis tools, such as JBrowse, Blast, gRNA, multiple sequence alignment (Muscle), KEGG/GO enrichment, heatmap, primer design, gene prediction (GeneWise), genome alignment (Lastz), target prediction of lncRNAs and miRNAs, transcription factor identification, transposable element identification, and motif binding site prediction. By incorporating JBrowse, EucaMOD facilitates seamless browsing of multi-omics data and significantly simplifies in-depth analysis and interpretation of Eucalyptus multi-omics data in an intuitive manner.    See Tutorial page for more help.
Morphlogy
Leaves, flowers, fruits and the whole plant picture of Eucalyptus albens
Leaf
Flower
Fruit
Whole plant
Genomics
Comparison of genome assembly and annotation in E. urophylla SAP FK118 and E. grandis SAP FK118
Comparative genomics
Phylogenetic tree inferred on the basis of single-copy orthologous groups
Comparative genomics
“MacroCollinearity” shows the collinear blocks in genome between E. urophylla SAP FK118 and E. grandis SAP FK118
Pan-proteome
The pan-proteome composition in each Eucalyptus species
Transcriptomics
Gene expression in different tissues visualized with Eucalyptus eFP
Epigenetics
DNA methylation browser in the “Epigenomics” module
Variomics
Descriptions of genomic variation showed in the “Variomics” module

Data Statistics

2207
Samples
45
Genomes
39
Species
13
Tools
Sort ：
Filter ：
Loading, please wait
Type
Number of samples
Number of species
Characteristic
Genome Assembly4539 2,064,765 genes
RNA-seq870 10703,774 transcripts
miRNA-seq173797 miRNAs
SNP variation1,21911 46,310,119 variations
Indel variation 1,219118,398,921variations
DAP-seq26133,432 peaks
DNase-seq121 712,334 peaks
ChIP-seq14 1 234,680 peaks

Tools

Please cite:  Li, M., Cao, Y., Wu, W., Mo, Y., Wang, J., Geng, X., Xu, J., Fei, Y., Su, G., Hu, H., Li, K., Ni, J., Xu, Z.-F.* (2025). EucaMOD: a comprehensive multi-omics database for functional genomics research and molecular breeding of fast-growing eucalyptus trees. The Plant Journal 124 (5): e70603. doi:https://doi.org/10.1111/tpj.70603

Related Links