Eucalyptus multi-omics database (EucaMOD)
Welcome to EucaMOD
Eucalyptus multi-omics database (EucaMOD) integrates a wide range of omics data, including genomics, comparative genomics, super-pan-proteome, transcriptomics, epigenetics, and variomics. It also features 13 powerful analysis tools, such as JBrowse, Blast, gRNA, multiple sequence alignment (Muscle), KEGG/GO enrichment, heatmap, primer design, gene prediction (GeneWise), genome alignment (Lastz), target prediction of lncRNAs and miRNAs, transcription factor identification, transposable element identification, and motif binding site prediction. By incorporating JBrowse, EucaMOD facilitates seamless browsing of multi-omics data and significantly simplifies in-depth analysis and interpretation of Eucalyptus multi-omics data in an intuitive manner.
See Tutorial page for more help.
Morphlogy
Leaves, flowers, fruits and the whole plant picture of
Eucalyptus albens
Leaf
Flower
Fruit
Whole plant
Genomics
Comparison of genome assembly and annotation in
E. urophylla SAP FK118 and E. grandis
SAP FK118
Comparative genomics
Phylogenetic tree inferred on the basis of single-copy orthologous groups
Comparative genomics
“MacroCollinearity” shows the collinear blocks in genome between
E. urophylla SAP FK118 and E. grandis
SAP FK118
Super-pan-proteome
The pan-proteome composition in each Eucalyptus species
Transcriptomics
Gene expression in different tissues visualized with Eucalyptus eFP
Epigenetics
DNA methylation browser in the “Epigenomics” module
Variomics
Descriptions of genomic variation showed in the “Variomics” module
Data Statistics
2207
Samples
45
Genomes
39
Species
13
Tools
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Type |
Number of samples |
Number of species |
Characteristic |
|---|---|---|---|
| Genome Assembly | 45 | 39 | 2,064,765 genes |
| RNA-seq | 870 | 10 | 703,774 transcripts |
| miRNA-seq | 17 | 3 | 797 miRNAs |
| SNP variation | 1,219 | 11 | 46,310,119 variations |
| Indel variation | 1,219 | 11 | 8,398,921variations |
| DAP-seq | 26 | 1 | 33,432 peaks |
| DNase-seq | 12 | 1 | 712,334 peaks |
| ChIP-seq | 14 | 1 | 234,680 peaks |
Tools
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